Merge pull request #86 from EcoJulia/rr/compat

Update workflows and compat

.github/workflows/CI.yml

@@ -8,6 +8,10 @@ on:
       - '*'
   pull_request:
 
+permissions:
+  actions: write
+  contents: read
+
 jobs:
   test:
     name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
@@ -26,17 +30,18 @@ jobs:
         experimental: [false]
     steps:
       - uses: actions/checkout@v4
-      - uses: julia-actions/setup-julia@v1
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
+      - uses: julia-actions/cache@v1
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v3
+      - uses: codecov/codecov-action@v4
         with:
-          file: ./lcov.info
           flags: unittests
           name: codecov-umbrella
           fail_ci_if_error: false
-          token: ${{ secrets.CODECOV }}
+          token: ${{ secrets.CODECOV_TOKEN }}
+          verbose: true

.github/workflows/CompatHelper.yml

@@ -3,7 +3,7 @@ name: CompatHelper
 on:
   push:
     branches:
-      - master
+      - main
   schedule:
     - cron: '00 00 * * *'
 
@@ -19,7 +19,7 @@ jobs:
         os:
           - ubuntu-latest
     steps:
-      - uses: julia-actions/setup-julia@v1
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.julia-version }}
           arch: ${{ matrix.arch }}
@@ -37,4 +37,5 @@ jobs:
           CompatHelper.main()
         shell: julia --color=yes {0}
         env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/Doc_preview_cleanup.yml

@@ -9,7 +9,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout gh-pages branch
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
         with:
           ref: gh-pages
 
@@ -25,4 +25,4 @@ jobs:
 
       - name: Push changes
         run: |
-            git push --force origin gh-pages-new:gh-pages
+            git push --force origin gh-pages-new:gh-pages

.github/workflows/Documentation.yml

@@ -3,7 +3,7 @@ name: Documentation
 on:
   push:
     branches:
-      - master
+      - main
     tags: '*'
   pull_request:
 
@@ -13,7 +13,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - uses: julia-actions/setup-julia@v1
+      - uses: julia-actions/setup-julia@v2
         with:
           version: '1'
       - uses: julia-actions/julia-buildpkg@v1

Project.toml

@@ -4,7 +4,7 @@ keywords = ["macroecology", "ecology", "biology", "geography"]
 license = "MIT"
 desc = "Julia framework for spatial ecology"
 authors = ["mkborregaard <[email protected]"]
-version = "0.9.16"
+version = "0.9.17"
 
 [deps]
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
@@ -21,7 +21,7 @@ StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 
 [compat]
 DataFrames = "1.0, 1.1, 1.2"
-DataFramesMeta = "0.5, 0.6, 0.7, 0.8, 0.9, 0.10, 0.11, 0.12, 0.13, 0.14"
+DataFramesMeta = "0.5, 0.6, 0.7, 0.8, 0.9, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15"
 Distances = "0.8, 0.9, 0.10"
 EcoBase = "0.1"
 Random = "1"

README.md

@@ -5,7 +5,7 @@
 
 ![version](https://img.shields.io/github/v/tag/EcoJulia/SpatialEcology.jl?sort=semver&style=flat-square)
 [![CI](https://github.com/EcoJulia/SpatialEcology.jl/actions/workflows/CI.yml/badge.svg)](https://github.com/EcoJulia/SpatialEcology.jl/actions/workflows/CI.yml)
-![Doc](https://img.shields.io/github/workflow/status/EcoJulia/SpatialEcology.jl/Documentation?label=Doc&style=flat-square)
+![Doc](https://img.shields.io/github/actions/workflow/status/EcoJulia/SpatialEcology.jl/Documentation.yml?branch=main)
 [![codecov](https://codecov.io/gh/EcoJulia/SpatialEcology.jl/graph/badge.svg?token=DeSFZuHa99)](https://codecov.io/gh/EcoJulia/SpatialEcology.jl)
 
 ## Primary author: Michael Krabbe Borregaard (@mkborregaard)