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20 Open 88 Closed
20 Open 88 Closed
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Issues list

Difficulties in installing Jovian helper environment good first issue Good for newcomers help wanted Extra attention is needed
#177 opened Jun 24, 2022 by tengfei-emory
1
Improvement: change to mimimap2 aligner in ILM-RA workflow enhancement New feature or request
#159 opened Sep 2, 2020 by DennisSchmitz
In IGV, "Unsatisfiable Range" error is thrown wontfix This will not be worked on
#158 opened Sep 2, 2020 by DennisSchmitz
Remove Krona-LCA from workflow and required databases enhancement New feature or request
#148 opened Jun 2, 2020 by florianzwagemaker 0.9.8
@DennisSchmitz @florianzwagemaker
FAQ: SPAdes, and thus Jovian, is only comparable across systems/installations if the same amount of threads are used for assembly. faq Frequently asked question wontfix This will not be worked on
#145 opened May 18, 2020 by DennisSchmitz
@DennisSchmitz
FAQ: LoFreq gives error "OSError: [Errno 7] Argument list too long: lofreq faq Frequently asked question wontfix This will not be worked on
#143 opened May 8, 2020 by DennisSchmitz
@DennisSchmitz
1
Stop assuming logical $PATH configurations of end-users enhancement New feature or request
#137 opened Apr 28, 2020 by DennisSchmitz 0.9.8
@DennisSchmitz
Save disk space by compressing fastq files (after trimming and filtering)
#136 opened Apr 14, 2020 by samnooij 0.9.7.1
@samnooij
5
Automate the detection and configuration of local and remote system resources enhancement New feature or request
#127 opened Mar 11, 2020 by florianzwagemaker
@florianzwagemaker
HuGo_removal_pt1 crashes on big datasets bug Something isn't working
#124 opened Mar 10, 2020 by DennisSchmitz 0.9.8
@DennisSchmitz @florianzwagemaker
Fragment_length_analysis step crashes on low-quality/low-abundance samples bug Something isn't working
#117 opened Feb 6, 2020 by DennisSchmitz
@DennisSchmitz
'grid' mode does not seem to work with Open Grid Scheduler clarification needed Clarify something in the code or the README
#105 opened Nov 6, 2019 by samnooij
5
SNP_calling rule crashes for samples with more than 131072 contigs per sample due to a limitation in LoFreq bug Something isn't working wontfix This will not be worked on
#102 opened Oct 25, 2019 by DennisSchmitz
@DennisSchmitz
1
Enhancement: scaffolds ends are sometimes of poor quality enhancement New feature or request
#101 opened Oct 18, 2019 by DennisSchmitz
@DennisSchmitz
Continuous dev-branch, setup travis-CI and codecov enhancement New feature or request
#81 opened Aug 6, 2019 by DennisSchmitz 1.1
@DennisSchmitz @florianzwagemaker
2
Improvement: Add bitscore and query scaffold coverage to taxonomic classification output enhancement New feature or request
#77 opened Jul 24, 2019 by DennisSchmitz 1.1
@DennisSchmitz @florianzwagemaker
Add functional annotations to the gff files. enhancement New feature or request
#74 opened Jul 5, 2019 by thierryjanssens
@thierryjanssens
Use codon usage information to infer host enhancement New feature or request help wanted Extra attention is needed
#23 opened Apr 17, 2019 by DennisSchmitz
MultiQC: confusing values bug Something isn't working help wanted Extra attention is needed
#21 opened Apr 10, 2019 by DennisSchmitz
1
Addition of PostgreSQL and individual tables in order to collect data from all Jovian runs enhancement New feature or request
#1 opened Apr 1, 2019 by DennisSchmitz
@florianzwagemaker
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