3.4.1
What's Changed
- Image overcropping issue in preBIBSNet resolved through implementation of SynthStrip by @LuciMoore to use a brain mask to determine the optimal axial cutting plane and Dockerfile updated by @madisoth to install SynthStrip in #124
- Removal of all logic, flags, dependencies etc required for the former cropping method using robustfov. Additionally, because cropping is no longer age-dependent, a participants.tsv file is no longer required #124
- Created attribute which writes out volumes.json by @tjhendrickson and fix for brain mask file name issue by @lundq163 in #121
Full Changelog: 3.4.0...3.4.1
Summary of major updates from prior pre-releases (see full details in history below) include:
- Replaced previous models with new production models that now don't have chirality issues (uses the no Mirroring class and sets flipping=False when generating segmentations): 540 (T1+T2), 541 (T1-only), 542 (T2-only) by @lundq163
- Remove chirality correction steps from postbibsnet by @LuciMoore in #114
- Inclusion of volumes.tsv in final outputs containing total size of each region by @tjhendrickson