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Update LabProtocol type acc. to 0.4_DRAFT profile #10

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Update LabProtocol type acc. to 0.4_DRAFT profile #10

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6d59750
Update LabProtocol type acc. to 0.4_DRAFT profile
ljgarcia Aug 3, 2020
2385e6d
Remove all properties coming from any ancestor
ljgarcia Aug 5, 2020
282a351
Fix typo
Aug 6, 2020
852fd07
Fix typo
Aug 6, 2020
c2cfbfd
Update properties according to 0.5_DRAFT profile
ljgarcia Sep 1, 2020
a53b777
Add links
ljgarcia Sep 1, 2020
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119 changes: 70 additions & 49 deletions data/ext/bio/LabProtocol.ttl
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Expand Up @@ -11,98 +11,119 @@ schema:LabProtocol
rdfs:subClassOf schema:CreativeWork ;
dc:source <http://bioschemas.org> .

schema:executionTime




schema:bioSampleUsed
a rdf:Property ;
schema:isPartOf <http://bio.schema.org> ;
rdfs:label "executiontime" ;
rdfs:comment "The time it takes to actually carry out the protocol in [ISO 8601 date format](http://en.wikipedia.org/wiki/ISO_8601)." ;
rdfs:label "bioSampleUsed" ;
rdfs:comment "BioSample used in the protocol. It could be a record in a Dataset describing the sample or a physical object corresponding to the sample or a URL pointing to the type of sample used." ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:Duration ;
schema:rangeIncludes schema:BioChemEntity, schema:BioSample, schema:DefinedTerm, schema:Text, schema:URL, schema:Taxon ;
dc:source <http://www.bioschemas.org/LabProtocol> .

schema:labEquipment
schema:labEquipmentUsed
a rdf:Property ;
schema:isPartOf <http://bio.schema.org> ;
rdfs:label "labEquipment" ;
rdfs:comment "For LabProtocols it would be a laboratory equipment use by a person to follow one or more steps described in this LabProtocol." ;
rdfs:label "labEquipmentUsed" ;
rdfs:comment "A laboratory equipment used by a person to follow one or more steps described in this LabProtocol." ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:DefinedTerm, schema:Text, schema:URL ;
dc:source <http://www.bioschemas.org/LabProtocol> .

schema:reagent
schema:protocolPurpose
a rdf:Property ;
schema:isPartOf <http://bio.schema.org> ;
rdfs:label "reagent" ;
rdfs:comment "Reagent used in the protocol. It can be a record in a Dataset describing the reagent or a BioChemEntity corresponding to the reagent or a URL pointing to the type of reagent used. ChEBI and PubChem entities can be used whenever available. Commercial names are also acceptable (URL if possible)." ;
rdfs:label "protocolPurpose" ;
rdfs:comment "The purpose of the protocol enables readers to make a decision as to the suitability of the protocol to their experimental problem, see more information at [PurposeOfProtocol](http://vocab.linkeddata.es/SMARTProtocols/myDocumentation_SPdoc_18Abril2017/index_SPdoc_V4.0.html#PurposeOfProtocol)." ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:BioChemEntity, schema:DefinedTerm, schema:Text, schema:URL ;
schema:rangeIncludes schema:CreativeWork, schema:Text ;
dc:source <http://www.bioschemas.org/LabProtocol> .

schema:sampleUsed
schema:reagentUsed
a rdf:Property ;
schema:isPartOf <http://bio.schema.org> ;
rdfs:label "sampleUsed" ;
rdfs:comment "Sample used in the protocol. It could be a record in a Dataset describing the sample or a physical object corresponding to the sample or a URL pointing to the type of sample used." ;
rdfs:label "reagentUsed" ;
rdfs:comment "Reagents used in the protocol. ChEBI and PubChem entities can be used whenever available. Commercial names are also acceptable. A reagent is defined as ‘A substance used in a chemical reaction to detect, measure, examine, or produce other substances’ in CHEBI:33893" ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:BioChemEntity, schema:DefinedTerm, schema:BioSample, schema:Text, schema:URL ;
dc:source <http://www.bioschemas.org/LabProtocol> .
schema:rangeIncludes schema:BioChemEntity, schema:MolecularEntity, schema:ChemicalSubstance, schema:DefinedTerm, schema:Text, schema:URL ;
dc:source <http://www.bioschemas.org/LabProtocol> .

schema:software




schema:protocolAdvantage
a rdf:Property ;
schema:isPartOf <http://bio.schema.org> ;
rdfs:label "software" ;
rdfs:comment "Software or tool used as part of the lab protocol to complete a part of it." ;
rdfs:label "protocolAdvantage" ;
rdfs:comment "Situations where the Protocol has been successfully employed including advantageous elements (e.g. better yield, shorter running time), see more information at [AdvantageOfTheProtocol](http://vocab.linkeddata.es/SMARTProtocols/myDocumentation_SPdoc_18Abril2017/index_SPdoc_V4.0.html#AdvantageOfTheProtocol)." ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:SoftwareApplication ;
schema:rangeIncludes schema:CreativeWork, schema:Text ;
dc:source <http://www.bioschemas.org/LabProtocol> .

schema:protocolAdvantage
schema:protocolApplication
a rdf:Property ;
schema:isPartOf <http://bio.schema.org> ;
rdfs:label "protocolAdvantage" ;
rdfs:comment "Situations where the Protocol has been successfully employed." ;
rdfs:label "protocolApplication" ;
rdfs:comment "Applications of the protocol list the full diversity of the applications of the method and support if is possible to extend the range of applications of the protocol. e.g. northern blot assays, sequencing, etc., see more information at [ApplicationOfTheProtocol](http://vocab.linkeddata.es/SMARTProtocols/myDocumentation_SPdoc_18Abril2017/index_SPdoc_V4.0.html#ApplicationOfTheProtocol)." ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:CreativeWork ;
dc:source <http://www.bioschemas.org/LabProtocol> .
schema:rangeIncludes schema:CreativeWork, schema:Text ;
dc:source <http://www.bioschemas.org/LabProtocol> .

schema:protocolLimitation
a rdf:Property ;
schema:isPartOf <http://bio.schema.org> ;
rdfs:label "protocolLimitation" ;
rdfs:comment "Situations where the Protocol would be unreliable or otherwise unsuccessful." ;
rdfs:comment "Situations where the Protocol would be unreliable or otherwise unsuccessful, see more information at [LimitationOfTheProtocol](http://vocab.linkeddata.es/SMARTProtocols/myDocumentation_SPdoc_18Abril2017/index_SPdoc_V4.0.html#LimitationOfTheProtocol)." ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:CreativeWork ;
dc:source <http://www.bioschemas.org/LabProtocol> .
schema:rangeIncludes schema:CreativeWork, schema:Text ;
dc:source <http://www.bioschemas.org/LabProtocol> .

schema:protocolApplication
schema:protocolOutcome
a rdf:Property ;
schema:isPartOf <http://bio.schema.org> ;
rdfs:label "protocolLimitation" ;
rdfs:comment "Applications of the protocol list the full diversity of the applications of the method and support if is possible to extend the range of applications of the protocol. e.g. northern blot assays, sequencing, etc." ;
rdfs:label "protocolOutcome" ;
rdfs:comment "Outcome or expected result by a protocol execution, see more information at [OutcomeOfTheProtocol](http://vocab.linkeddata.es/SMARTProtocols/myDocumentation_SPdoc_18Abril2017/index_SPdoc_V4.0.html#OutcomeOfTheProtocol)." ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:CreativeWork ;
dc:source <http://www.bioschemas.org/LabProtocol> .
schema:rangeIncludes schema:CreativeWork, schema:Text ;
dc:source <http://www.bioschemas.org/LabProtocol> .

schema:protocolOutcome
schema:softwareUsed
a rdf:Property ;
schema:isPartOf <http://bio.schema.org> ;
rdfs:label "protocolLimitation" ;
rdfs:comment "Outcome or expected result by a protocol execution." ;
rdfs:label "softwareUsed" ;
rdfs:comment "Software or tool used as part of the lab protocol to complete a part of it." ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:CreativeWork ;
dc:source <http://www.bioschemas.org/LabProtocol> .
schema:rangeIncludes schema:SoftwareApplication, schema:URL ;
dc:source <http://www.bioschemas.org/LabProtocol> .


schema:performTime
a rdf:Property ;
rdfs:label "performTime" ;
rdfs:comment "The length of time it takes to perform instructions or a direction (not including time to prepare the supplies), in [ISO 8601 duration format](http://en.wikipedia.org/wiki/ISO_8601)." ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:Duration .

schema:purpose
schema:prepTime
a rdf:Property ;
rdfs:label "purpose" ;
rdfs:comment "A goal towards an action is taken. Can be concrete or abstract." ;
schema:domainIncludes schema:AllocateAction, schema:LabProtocol, schema:MedicalDevice, schema:PayAction ;
schema:rangeIncludes schema:MedicalDevicePurpose, schema:Text, schema:Thing ;
schema:isPartOf <http://health-lifesci.schema.org> .
rdfs:label "prepTime" ;
rdfs:comment "The length of time it takes to prepare the items to be used in instructions or a direction, in [ISO 8601 duration format](http://en.wikipedia.org/wiki/ISO_8601)." ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:Duration .

schema:step
schema:totalTime
a rdf:Property ;
rdfs:label "step" ;
rdfs:comment "A single step item (as HowToStep, text, document, video, etc.) or a HowToSection." ;
schema:domainIncludes schema:HowTo, schema:LabProtocol ;
schema:rangeIncludes schema:CreativeWork, schema:HowToSection, schema:HowToStep, schema:Text .
rdfs:label "totalTime" ;
rdfs:comment "The total time required to perform instructions or a direction (including time to prepare the supplies), in [ISO 8601 duration format](http://en.wikipedia.org/wiki/ISO_8601)." ;
schema:domainIncludes schema:LabProtocol ;
schema:rangeIncludes schema:Duration .