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pigz dependency not part of Openstack deploy pack #328

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nerdstrike opened this issue Jul 9, 2021 · 0 comments
Open

pigz dependency not part of Openstack deploy pack #328

nerdstrike opened this issue Jul 9, 2021 · 0 comments

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@nerdstrike
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nerdstrike commented Jul 9, 2021

Attempts to run a full CI build in Jenkins on Openstack produce errors relating to pigz:

#   Failed test 'alternate_output_dir died (Command 'pigz' not found in ./bin, 
*snip*
..../npg_npg_deployment/npg_stack/npg/20210708/lib/perl5/WTSI/DNAP/Utilities/Runnable.pm line 138.)'
#   at t/lib/WTSI/NPG/HTS/Test.pm line 40.
#   (in WTSI::NPG::OM::BioNano::RunPublisherTest->alternate_output_dir)

I can't tell whether the test is invoking a tool we don't need, or the tool is not being installed when it should be.

The /software/pkgg was built in May via Ansible

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