ERROR: compilation failed for package ‘mzR’ (centos7/R 4.3.1)

[ddafeng]

In file included from ./boost/regex.hpp:28:0,
from boost/libs/regex/src/posix_api.cpp:22:
./boost/regex/config.hpp:189:43: 致命错误：boost/regex/config/cwchar.hpp：没有那个文件或目录

include <boost/regex/config/cwchar.hpp>

                                       ^

编译中断。
make: *** [boost/libs/regex/src/posix_api.o] 错误 1
ERROR: compilation failed for package ‘mzR’

[sneumann]

Hi ddafeng, thanks for reporting.
which compiler are you using here, is that gcc or clang ?
I also don't understand the chinese, is my guess correct that the compiler says
it can't find cwchar.hpp ?
Yours, Steffen

[sneumann]

I added the missing file in 5143a8f, but I can't test if others are missing.
Could you check if the github devel version in https://github.com/sneumann/mzR compiles on your setup ?
Thanks, Yours, Steffen

[ddafeng]

Thank you for your reply, I tried a lot to solve the problem, and finally I was able to install mzR in centos 7 with the help of the Anaconda platform. Anaconda is a good R package and Python package management platform that solves the problem of missing dependencies. Of course, I also tried to find a possible reason for the missing dependency files, and I guessed that there might be a problem with the Boost inventory under the BH package, but I didn't know much about it, so I didn't find the root cause. I apologize for not being able to provide you with valuable advice. 谢谢您的回复，为解决问题我做了跟多的尝试，最终我借助Anaconda平台在centos7中完成了mzR的安装。Anaconda是一个比较不错的R包和Python包管理平台，解决了依赖缺失的问题。当然中途我也尝试寻找依赖文件缺失的可能原因，我猜测可能是BH包下的Boost库存在问题，然而我对此不太了解，因此我也没有发现根本的原因。无法为您提供有价值的建议我很抱歉。 发件人: Steffen ***@***.***> 发送时间: 2023年11月3日 15:36 收件人: ***@***.***> 抄送: ***@***.***>; ***@***.***> 主题: Re: [sneumann/mzR] ERROR: compilation failed for package ‘mzR’ (centos7/R 4.3.1) (Issue #286) I added the missing file in 5143a8f<5143a8f>, but I can't test if others are missing. Could you check if the github devel version in https://github.com/sneumann/mzR compiles on your setup ? Thanks, Yours, Steffen ― Reply to this email directly, view it on GitHub<#286 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/A63YO7U22ODXZJJX455AKS3YCSNH7AVCNFSM6AAAAAA634ZVJ2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTOOJRHE4TAOBQGM>. You are receiving this because you authored the thread.Message ID: ***@***.***>

[sneumann]

Hi, thanks for reporting back. Just for the record, the boost BH package is not used, since (last time I checked) it has the header files and does not include everything we'd need in mzR (specifically, the compiled libraries).
That anaconda works could mean that this packaging uses a different compiler, language environment or R version. So I won't merge the PR until someone confirms that it solves an issue. Yours, Steffen