diff --git a/docs/Installation.md b/docs/Installation.md index d4af6f9..d03109e 100644 --- a/docs/Installation.md +++ b/docs/Installation.md @@ -25,8 +25,31 @@ How to install and run SAIGE and SAIGE-GENE ### Logs: -## v1.1.9 (Updated on May 11, 2023) +## v1.3.0 (Updated on Sept 09, 2023) + +Bug fixed: + +fix the bug that causes overestimation of SE for markers when SPA is applied. This bug was introduced since v1.1.6 when the function R::qnorm is used due to the logp argument. + +To correct the SE estimation without re-run the association tests with v1.3.0, please use the following R to re-estimate the SE for markers with SPA applied + +``` +SE = abs(BETA/qnorm(p.value/2)) +``` + +## v1.2.0 (Updated on Jun 12, 2023) + +Merge pull request #90 from belowlab/vectors-for-safer-memory + +Update ComputeExact to use vectors rather than raw memory where easy + +When PLINK files are used as input, marker IDs in the group file must match the ID column in PLINK files +Bug fixed: + +fix the bug that rewrite the list of marker IDs when the first chunk is empty + +## v1.1.9 (Updated on May 11, 2023) Merge pull request #90 from belowlab/vectors-for-safer-memory diff --git a/docs/Installation_docker.md b/docs/Installation_docker.md index 7c7927f..4ce4fb6 100644 --- a/docs/Installation_docker.md +++ b/docs/Installation_docker.md @@ -16,7 +16,7 @@ Thanks to Juha Karjalainen for sharing the Dockerfile. * The docker image can be pulled ``` - docker pull wzhou88/saige:1.1.9 + docker pull wzhou88/saige:1.3.0 ``` Functions can be called