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Load data from QuantStudio qPCR systems #134

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ewallace opened this issue Dec 21, 2021 · 2 comments
Open
4 tasks

Load data from QuantStudio qPCR systems #134

ewallace opened this issue Dec 21, 2021 · 2 comments
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enhancement New feature or request help wanted Extra attention is needed

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@ewallace
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@j-aux has been using tidyqpcr to work with ThermoFisher QuantStudio qPCR systems (no doubt trademarked.

Jamie has shared prototype code and anonymised data with @DimmestP and @ewallace via dropbox.

We need to add this capability into tidyqpcr by:

  • writing a read_... function
  • testing the read_... function
  • showing that we can reproduce Jamie's analysis
  • deciding if we incorporate as an additional vignette, or put it in an additional repository e.g. `tidyqpcr_examples, to be addressed in separate issue tickets.
@ewallace ewallace added enhancement New feature or request help wanted Extra attention is needed labels Dec 21, 2021
@DimmestP
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Suggestion to create a write_plate function to automatically output tidyqpcr plate plan into a form QuantStudio can read (else you have to manually select and label all used wells using GUI on machine)

@ewallace ewallace self-assigned this May 31, 2024
@ewallace
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I will start working on this, following the checklist above.

@j-aux will send example code for writing out the plate plan to QuantStudio format.

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