-
Notifications
You must be signed in to change notification settings - Fork 3
/
mkdocs.yaml
112 lines (101 loc) · 3.12 KB
/
mkdocs.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
site_name: Progenetix Documentation
site_description: 'Documentation for the Progenetix oncogenomics resource'
site_author: Michael Baudis
copyright: '© Copyright 2023, Michael Baudis and progenetix.org'
repo_name: progenetix-web
repo_url: https://github.com/progenetix/progenetix-web
# vars for common files (shared between sites) #################################
api_site_label: '[Progenetix](https://progenetix.org)'
api_web_root: https://progenetix.org
api_dataset_ids: progenetix
################################################################################
nav:
- Documentation Home: index.md
- News: news
- Data Changes: changelog
# - Pages & Forms: ui
- Analysis in R - pgxRpi: pgxRpi
- Use Case Examples: use-cases
- Beacon+ API Use: common/beacon-api
- Services API: services
- File Formats: file-formats
- Plotting & Visualizations: common/plotting
- Classifications, Ontologies & Standards: common/classifications-and-ontologies
- Publication Collection: publication-collection
- Data Review: progenetix-data-review
- Technical Notes: technical-notes
# - Progenetix Website Builds: progenetix-website-builds
- Progenetix Data ↗: http://progenetix.org
- cancercelllines.org ↗: http://cancercelllines.org
- Baudisgroup @ UZH ↗: http://info.baudisgroup.org
################################################################################
markdown_extensions:
- toc:
toc_depth: 2-3
permalink: true
- admonition
- attr_list
- footnotes
- md_in_html
- pymdownx.critic
- pymdownx.caret
- pymdownx.details
- pymdownx.keys
- pymdownx.magiclink:
hide_protocol: true
- pymdownx.mark
- pymdownx.tilde
- pymdownx.saneheaders
- pymdownx.snippets
- pymdownx.superfences:
custom_fences:
- name: mermaid
class: mermaid
format: !!python/name:mermaid2.fence_mermaid
- pymdownx.tabbed:
alternate_style: true
- pymdownx.tasklist:
custom_checkbox: true
- tables
- mdx_gh_links:
user: progenetix
repo: progenetix-web
- pymdownx.emoji:
emoji_index: !!python/name:materialx.emoji.twemoji
emoji_generator: !!python/name:materialx.emoji.to_svg
###############################################################################
theme:
# name: readthedocs
name: material
palette:
primary: deep orange
favicon: img/site-logo-topright.png
logo: img/site-logo-topright.png
icon:
repo: fontawesome/brands/github-alt
admonition:
example: octicons/list-ordered-24
features:
- content.tabs.link
- search.highlight
- search.share
- navigation.instant
- navigation.tracking
- navigation.sections
custom_dir: extra
plugins:
- search
- macros
- mermaid2
extra:
excerpt_separator: <!--more-->
blog_list_length: 100
social:
- icon: fontawesome/brands/mastodon
link: https://genomic.social/@progenetix
- icon: fontawesome/brands/github
link: https://github.com/progenetix
extra_css:
- css/theme_overrides.css
# extra_javascript:
# - https://cdnjs.cloudflare.com/ajax/libs/tablesort/5.2.1/tablesort.min.js