Bash, R, and python scripts used for nuclear-enriched m6A methylated RNA immunoprecipitation followed by deep sequencing (neMeRIP-seq) data analysis in Bertero et al. Check Supplementary Methods in the publication for more details.
Bertero et al. (2018) The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency. Nature 555:256–259. DOI: http://dx.doi.org/10.1038/nature25784