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I can load my fasta and run the indexing function fine, but it simply produces nothing. The outpout looks like below in my terminal:
[build] loading fasta file Homo_sapiens.GRCh38.cdna.all.fa [build] k-mer length: 31 [build] counting k-mers ... done. [build] building target de Bruijn graph ... done [build] creating equivalence classes ... done [build] target de Bruijn graph has 0 contigs and contains 0 k-mers
The inside of the indexed file appears like:
0a00 0000 0000 0000 1f00 0000 0000 0000 0000 0000 0000 0000 0000 0000 0000 0000 0000 0000 0000 0000
The text was updated successfully, but these errors were encountered:
Can you check if your Homo_sapiens.GRCh38.cdna.all.fa file actually contains anything?
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I can load my fasta and run the indexing function fine, but it simply produces nothing. The outpout looks like below in my terminal:
[build] loading fasta file Homo_sapiens.GRCh38.cdna.all.fa
[build] k-mer length: 31
[build] counting k-mers ... done.
[build] building target de Bruijn graph ... done
[build] creating equivalence classes ... done
[build] target de Bruijn graph has 0 contigs and contains 0 k-mers
The inside of the indexed file appears like:
0a00 0000 0000 0000 1f00 0000 0000 0000
0000 0000 0000 0000 0000 0000 0000 0000
0000 0000 0000 0000
The text was updated successfully, but these errors were encountered: