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    95 repositories

    • curvelets

      Public
      Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)
      MATLAB
      •
      Other
      •17•22•17•0•Updated Oct 31, 2024Oct 31, 2024

    • EBEAM_dashboard

      Public
      EBEAM System GUI
      Python
      •0•3•0•4•Updated Oct 31, 2024Oct 31, 2024

    • qp-scope

      Public
      Controlling a microscope through some sort of python control interface (Pycromanager) and MicroManager
      Groovy
      •
      MIT License
      •1•1•0•0•Updated Oct 10, 2024Oct 10, 2024

    • he_shg_synth_workflow

      Public
      Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis
      Python
      •5•9•2•1•Updated Jul 26, 2024Jul 26, 2024

    • VTRX_firmware

      Public
      C++
      •0•1•0•0•Updated Jul 7, 2024Jul 7, 2024

    • spieopticamadison.org

      Public
      UW SPIE/Optica website
      SCSS
      •
      Creative Commons Zero v1.0 Universal
      •1•0•3•0•Updated Jun 19, 2024Jun 19, 2024

    • MultivariateAnalysis_FLIM

      Public
      Determination of Coefficient of Variation in complex FLIM datasets under different imaging conditions
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jun 6, 2024Jun 6, 2024

    • 972b

      Public
      Arduino library for the 972B Vacuum Pressure Transducer.
      C++
      •0•1•0•0•Updated May 21, 2024May 21, 2024

    • basic-stitching

      Public
      Based on QuPath extension template - for basic tiling with no overlap resolution
      Groovy
      •
      MIT License
      •0•0•0•0•Updated May 15, 2024May 15, 2024

    • collagen-fiber-metrics

      Public
      Deep generative models for collagen fiber centerline segmentation and extraction in cancer tissue
      deep-learninggenerative-adversarial-networkimage-segmentationvariational-autoencodercomputational-pathologyhistopathologycollagen-fibers
      Jupyter Notebook
      •1•6•0•0•Updated Mar 13, 2024Mar 13, 2024

    • Flamingo_Control

      Public
      Controlling a Flamingo microscope from Python
      Python
      •
      MIT License
      •1•1•0•0•Updated Jan 30, 2024Jan 30, 2024

    • BasicStitching

      Public
      Mike's test for 0.4.x extension
      Groovy
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • optogensim

      Public
      MATLAB
      •
      BSD 2-Clause "Simplified" License
      •2•3•0•0•Updated Jan 19, 2024Jan 19, 2024

    • website-tests

      Public
      Automated tests for LOCI websites
      Perl
      •
      The Unlicense
      •1•0•0•0•Updated Dec 6, 2023Dec 6, 2023

    • PaQuO_test

      Public
      Testing Python control of QuPath projects
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 22, 2023Nov 22, 2023

    • RT-FLIM

      Public
      This is the Real Time FLIM Estimation project.
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 17, 2023Oct 17, 2023

    • dashboardsforMM

      Public
      Jupyter Dashboards for MicroManager OpenScan-TimeTagger Operation and SmartMicroscope Modules
      Jupyter Notebook
      •1•0•0•0•Updated Aug 17, 2023Aug 17, 2023

    • spieosamadison.org

      Public
      spieosamadison.org -> spieopticamadison.org
      HTML
      •0•0•0•0•Updated Jun 21, 2023Jun 21, 2023

    • eliceirilab.org

      Public
      eliceirilab.org -> loci.wisc.edu
      HTML
      •0•0•0•0•Updated Jun 21, 2023Jun 21, 2023

    • prototype.wisc.edu

      Public
      HTML
      •0•0•0•0•Updated May 9, 2023May 9, 2023

    • uw-loci.github.io

      Public
      LOCI software articles
      Ruby
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 4, 2023May 4, 2023

    • MR_dilution_phantom

      Public
      Preclinical phantom for quantitative solution comparison in a small animal magnetic resonance imaging (MRI) machine
      1•1•0•1•Updated Apr 29, 2023Apr 29, 2023

    • napari-live-flim

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Mar 14, 2023Mar 14, 2023

    • search-image-sc

      Public
      Image.sc search service
      Python
      •
      The Unlicense
      •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

    • gnn-pccp

      Public
      Graph neural networks for PDAC vs CP in histology
      deep-neural-networksdeep-learningcomputational-pathologypancreatic-cancertumor-detectiongraph-neural-networkshistopathologycomputational-histopathologycollagen-fiberspancreatitis
      Jupyter Notebook
      •1•6•0•0•Updated Dec 12, 2022Dec 12, 2022

    • multiscale

      Public
      Modules for multiscale imaging at LOCI
      Python
      •
      Other
      •1•1•0•1•Updated Nov 29, 2022Nov 29, 2022

    • SETI

      Public
      Sequential Erosion Tissue Imaging (SETI) Microscope Project
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 22, 2022Nov 22, 2022

    • smart-wsi-scanner

      Public
      Trainable multi-modal whole slide image scanner built on motorized microscope
      Jupyter Notebook
      •1•4•0•0•Updated Sep 27, 2022Sep 27, 2022

    • lsm-run-time-enhancement

      Public
      Super-resolution and denoising for laser scanning microscopy
      Jupyter Notebook
      •1•0•0•0•Updated Sep 7, 2022Sep 7, 2022

    • zebrafish_2D_segmentation

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 27, 2022Jul 27, 2022