Repositories list

• infrastructure

  Public
  Jinja

  •1•0•1•0•Updated Oct 22, 2024Oct 22, 2024

• musica

  Public
  MuSiCa - Mutational Signatures in Cancer

  R

  •

  MIT License

  •13•0•0•0•Updated Sep 26, 2024Sep 26, 2024

• DL_LCNEC_pRBsubtyping_HE

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

• two-step-TL

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• BenchAMRking-scripts

  Public
  Code for figures

  Python

  •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• benchAMRking

  Public
  SCSS

  •

  Creative Commons Zero v1.0 Universal

  •0•2•0•0•Updated Sep 5, 2024Sep 5, 2024

• transferlearningproject

  Public
  Python

  •0•0•0•0•Updated Sep 3, 2024Sep 3, 2024

• EMC-Neoantigen

  Public
  nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

  Nextflow

  •

  Other

  •24•0•0•0•Updated Sep 2, 2024Sep 2, 2024

• TME_Analyzer

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 26, 2024Jul 26, 2024

• EMC-CanMic

  Public
  Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.

  Nextflow

  •

  MIT License

  •1•0•0•0•Updated Jul 9, 2024Jul 9, 2024

• reconCNV

  Public
  visualize CNV data from targeted capture based sequencing data

  Python

  •

  GNU General Public License v3.0

  •8•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• molclass

  Public
  Moleculair classification tool, search for a variant and get results from many sources

  Python

  •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

• shm_csr

  Public
  Somatic hypermutation and class switch recombination pipeline

  R

  •

  MIT License

  •2•1•0•0•Updated Jan 10, 2024Jan 10, 2024

• SigMA

  Public
  Mutational signature analysis for low statistics SNV data

  R

  •

  Other

  •21•0•0•0•Updated Nov 29, 2023Nov 29, 2023

• HPV-EM

  Public
  HPV-EM is an HPV genotyping tool that utilizes an expectation maximization algorithm to identify the presence of HPV genotypes in a sample from RNA-seq data

  Python

  •4•0•0•0•Updated Sep 21, 2023Sep 21, 2023

• OrganoTrack

  Public
  Image analysis pipeline of organoid images

  Python

  •0•0•0•0•Updated Aug 28, 2023Aug 28, 2023

• SuReCAN

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Jul 14, 2023Jul 14, 2023

• MasterProjectAI_Daria-

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Jul 14, 2023Jul 14, 2023

• TOSCA

  Public
  Snakemake workflow for somatic mutation detection without matched normal samples

  Python

  •

  MIT License

  •2•0•0•0•Updated Jun 15, 2023Jun 15, 2023

• installed-tools

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated May 9, 2023May 9, 2023

• tmz-analysis

  Public
  Bioinformatics analysis of the tmz paper

  R

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated May 5, 2023May 5, 2023

• galaxy

  Public
  Data intensive science for everyone.

  Python

  •

  Other

  •1k•0•0•0•Updated Jan 31, 2023Jan 31, 2023

• erasmusmc-bioinformatics.github.io

  Public
  ErasmusMC Bioinformatics Landing Page

  HTML

  •

  MIT License

  •1•0•4•9•Updated Jan 27, 2023Jan 27, 2023

• iobio_containers

  Public
  Clin.iobio and gene.iobio dockerized.

  JavaScript

  •0•1•0•0•Updated Jan 26, 2023Jan 26, 2023

• OIO_Shaoshi

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 23, 2022Dec 23, 2022

• doval

  Public
  Python

  •1•0•0•1•Updated Dec 9, 2022Dec 9, 2022

• tools-iuc

  Public
  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  HTML

  •

  MIT License

  •424•0•0•0•Updated Sep 23, 2022Sep 23, 2022

• IMAP_LUAD

  Public
  0•0•0•0•Updated Aug 28, 2022Aug 28, 2022

• emc-thesis-template

  Public template
  LaTeX template with correct margins, etc for Erasmus MC

  TeX

  •0•0•0•0•Updated Jul 22, 2022Jul 22, 2022

• training-material

  Public
  A collection of Galaxy-related training material

  HTML

  •

  Other

  •897•0•0•0•Updated Jul 1, 2022Jul 1, 2022