NAMESPACE

# Generated by roxygen2: do not edit by hand

export(buildRestrictedUniverse)
export(checkUniverseAppropriateness)
export(extractEnrichmentOverlaps)
export(getRegionFile)
export(getRegionSet)
export(listRegionSets)
export(loadRegionDB)
export(mergeRegionDBs)
export(plotTopLOLAEnrichments)
export(readBed)
export(readCollection)
export(readCollectionAnnotation)
export(readCollectionFiles)
export(readRegionGRL)
export(readRegionSetAnnotation)
export(redefineUserSets)
export(runLOLA)
export(setSharedDataDir)
export(splitFileIntoCollection)
export(writeCombinedEnrichment)
import(BiocGenerics)
import(IRanges)
import(S4Vectors)
import(methods)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,elementMetadata)
importFrom(GenomicRanges,strand)
importFrom(data.table,":=")
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,setDT)
importFrom(data.table,setcolorder)
importFrom(data.table,setkey)
importFrom(data.table,setkeyv)
importFrom(data.table,setnames)
importFrom(reshape2,melt)
importFrom(stats,fisher.test)
importFrom(stats,setNames)
importFrom(utils,write.table)