cutadapt trim_nextseq config typo

[cmatKhan]

The parameter documentation

chipseq/nextflow_schema.json

Line 210 in 76e2382

"help_text": "This enables the option Cutadapt `--nextseq-trim=3'CUTOFF` option via Trim Galore, which will set a quality cutoff (that is normally given with -q instead), but qualities of G bases are ignored. This trimming is in common for the NextSeq- and NovaSeq-platforms, where basecalls without any signal are called as high-quality G bases.",

and the cutadapt docs

https://cutadapt.readthedocs.io/en/stable/guide.html#nextseq-trim

seem to say that the cutadapt parameter is nextseq-trim. But the conf file sets it to just nextseq

https://github.com/nf-core/chipseq/blob/76e2382b6d443db4dc2396e6831d1243256d80b0/conf/modules.config#L138C50-L138C57

I think that should read:

params.trim_nextseq > 0 ? "--nextseq-trim ${params.trim_nextseq}" : '',

rather than

params.trim_nextseq > 0 ? "--nextseq ${params.trim_nextseq}" : '',

[cmatKhan]

edit -- nextseq is the correct trimgalore setting. my bad