You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
But whenever I try to run jvarkit, I get the following error:
JVARKIT
=======
Author : Pierre Lindenbaum Phd. Institut du Thorax. Nantes. France.
Exception in thread "main" java.lang.UnsupportedClassVersionError: htsjdk/samtools/util/CloserUtil has been compiled by a more recent version of the Java Runtime (class file version 61.0), this version of the Java Runtime only recognizes class file versions up to 55.0
at java.base/java.lang.ClassLoader.defineClass1(Native Method)
at java.base/java.lang.ClassLoader.defineClass(ClassLoader.java:1016)
at java.base/java.security.SecureClassLoader.defineClass(SecureClassLoader.java:174)
at java.base/jdk.internal.loader.BuiltinClassLoader.defineClass(BuiltinClassLoader.java:802)
at java.base/jdk.internal.loader.BuiltinClassLoader.findClassOnClassPathOrNull(BuiltinClassLoader.java:700)
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClassOrNull(BuiltinClassLoader.java:623)
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:581)
at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:521)
at com.github.lindenb.jvarkit.util.JVarkitVersion.<init>(JVarkitVersion.java:97)
at com.github.lindenb.jvarkit.util.JVarkitVersion.getInstance(JVarkitVersion.java:129)
at com.github.lindenb.jvarkit.tools.jvarkit.JvarkitCentral.usageMain(JvarkitCentral.java:344)
at com.github.lindenb.jvarkit.tools.jvarkit.JvarkitCentral.usage(JvarkitCentral.java:365)
at com.github.lindenb.jvarkit.tools.jvarkit.JvarkitCentral.run(JvarkitCentral.java:717)
at com.github.lindenb.jvarkit.tools.jvarkit.JvarkitCentral.main(JvarkitCentral.java:776)
As I understand, this has something to do with CloserUtil from samtools. So do I re-install samtools with lower version of Java ? (that would be a nightmare for other pipelines running in my server)...what would your suggestion ?
Regards,
Sangram
The text was updated successfully, but these errors were encountered:
has been compiled by a more recent version of the Java Runtime (class file version 61.0), this version of the Java Runtime only recognizes class file versions up to 55.0
Hello Pierre,
Thank you for such a wonderful application.
But whenever I try to run jvarkit, I get the following error:
As I understand, this has something to do with CloserUtil from samtools. So do I re-install samtools with lower version of Java ? (that would be a nightmare for other pipelines running in my server)...what would your suggestion ?
Regards,
Sangram
The text was updated successfully, but these errors were encountered: