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Jaeyoung Chun edited this page Oct 31, 2019 · 7 revisions

Welcome to the sharp wiki!

pip install cromwell-tools

export SHARP_VERSION="0.0.1"
aws s3 cp s3://dp-lab-home/software/sharp-${SHARP_VERSION}.tar.gz .
mkdir -p sharp-${SHARP_VERSION}
tar xzf sharp-${SHARP_VERSION}.tar.gz -C sharp-${SHARP_VERSION}
cd sharp-${SHARP_VERSION}

aws s3 cp s3://dp-lab-home/software/install-sharp-0.0.1.sh - | bash

Run

./submit.sh \
    -k ~/secrets-aws.json \
    -i config/PBMC_v2_Meth_Hash_2_ADT.inputs.json \
    -l config/PBMC_v2_Meth_Hash_2_ADT.labels.json \
    -o Sharp.options.aws.json