- Fixed bulk_rnaseq template using wrong wrong configuration (#33)
- Fixed parameter inconsistency with Fastq prefix
- Fixed file name slash sanitization (#37) (#38)
- Fixed code styling (#30)
- Removed ontology URI workaroung (#31)
- Set up project based on templates currently in cubi-tk
- Added automated validation testing (#2, #12)
- Added new template mass_cytometry (#4)
- Added new template somatic (#23)
- Removed template stem_cell_core (#8)
- Removed templates tumor_normal_dna and tumor_normal_triplets (#23)
- Changed
Library Name
headers toExtract Name
for ISA model compatibility (#3) - Converted 'internal' variables to private (#17)
- Fixed broken templates (#5, #6, #7, #19)