diff --git a/schema/5.0.0/schema.md b/schema/5.0.0/schema.md index 8cb304c1d..6b7eb40b9 100644 --- a/schema/5.0.0/schema.md +++ b/schema/5.0.0/schema.md @@ -1573,7 +1573,7 @@ When a dataset is uploaded, CELLxGENE Discover MUST automatically add the `schem ## Appendix A. Changelog -schema v5.0.0 +### schema v5.0.0 * General Requirements * Updated requirements to prohibit duplicate data submitter metadata field names in `obs` and `var` @@ -1591,9 +1591,9 @@ schema v5.0.0 * **Breaking change**. Updated the requirements for `cell_type_ontology_term_id` to replace `"CL:0000003"` for *native cell* with `"unknown"` to indicate that the cell type is unknown. * Updated the requirements for `disease_ontology_term_id` to restrict MONDO terms to the most accurate child of `"MONDO:0000001"` for _disease_ or `"MONDO:0021178"` for _injury_ or preferably its most accurate child. * uns (Dataset metadata) - * Prohibited fields with a size of zero + * Updated requirements. The data stored as a value for a key in `uns` MUST be `True`, `False`, `None`, or its size MUST NOT be zero. -schema v4.0.0 +### schema v4.0.0 * Required Ontologies * Updated CL to the 2023-08-24 release @@ -1629,7 +1629,7 @@ schema v4.0.0 * X (Matrix Layers) * Updated requirements for raw matrices -schema v3.1.0 +### schema v3.1.0 * Added section for Schema versioning * Required Ontologies @@ -1656,10 +1656,10 @@ schema v3.1.0 * Updated Seq-Well [EFO:0008919] to Seq-Well [EFO:0008919] and its children * uns (Dataset metadata) * `schema_version` - * Must must be annotated by CELLxGENE Discover and not the Curator. + * Must be annotated by CELLxGENE Discover and not the Curator. -schema v3.0.0 +### schema v3.0.0 * The canonical data format was updated from AnnData 0.7 to 0.8. * All references to the "final" matrix has been replaced with "normalized" for clarity. @@ -1678,6 +1678,7 @@ schema v3.0.0 * Updated `schema_version` * Deprecated `X_normalization` +### schema v2.0.0 schema v2.0.0 substantially *remodeled* schema v1.1.0: * "must", "should", and select other words have a defined, standard meaning. diff --git a/schema/5.1.0/schema.md b/schema/5.1.0/schema.md index 6a25f36e9..06ef1dbc0 100644 --- a/schema/5.1.0/schema.md +++ b/schema/5.1.0/schema.md @@ -1854,7 +1854,7 @@ When a dataset is uploaded, CELLxGENE Discover MUST automatically add the `schem ## Appendix A. Changelog -schema v5.1.0 +### schema v5.1.0 * General Requirements * Defined **Visium Single** as *Visium Spatial Gene Expression* datasets that represent one Space Ranger output for a single tissue section. @@ -1880,7 +1880,7 @@ schema v5.1.0 * Updated the value of `schema_version` to PENDING * Added `spatial` for **Visium Single** -schema v5.0.0 +### schema v5.0.0 * General Requirements * Updated requirements to prohibit duplicate data submitter metadata field names in `obs` and `var` @@ -1900,7 +1900,7 @@ schema v5.0.0 * uns (Dataset metadata) * Prohibited fields with a size of zero -schema v4.0.0 +### schema v4.0.0 * Required Ontologies * Updated CL to the 2023-08-24 release @@ -1936,7 +1936,7 @@ schema v4.0.0 * X (Matrix Layers) * Updated requirements for raw matrices -schema v3.1.0 +### schema v3.1.0 * Added section for Schema versioning * Required Ontologies @@ -1966,7 +1966,7 @@ schema v3.1.0 * Must be annotated by CELLxGENE Discover and not the Curator. -schema v3.0.0 +### schema v3.0.0 * The canonical data format was updated from AnnData 0.7 to 0.8. * All references to the "final" matrix has been replaced with "normalized" for clarity. @@ -1985,6 +1985,8 @@ schema v3.0.0 * Updated `schema_version` * Deprecated `X_normalization` +### schema v2.0.0 + schema v2.0.0 substantially *remodeled* schema v1.1.0: * "must", "should", and select other words have a defined, standard meaning.