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setup.cfg
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setup.cfg
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##########################
# Setup.py Configuration #
##########################
[metadata]
name = biolookup
version = 0.2.1-dev
description = Get metadata and ontological information about all biomedical entities.
long_description = file: README.md
long_description_content_type = text/markdown
# URLs associated with the project
url = https://github.com/biopragmatics/biolookup
download_url = https://github.com/biopragmatics/biolookup/releases
project_urls =
Bug Tracker = https://github.com/biopragmatics/biolookup/issues
Source Code = https://github.com/biopragmatics/biolookup
# Author information
author = Charles Tapley Hoyt
author_email = [email protected]
maintainer = Charles Tapley Hoyt
maintainer_email = [email protected]
# License Information
license = MIT
license_file = LICENSE
# Search tags
classifiers =
Development Status :: 1 - Planning
Environment :: Console
Intended Audience :: Developers
License :: OSI Approved :: MIT License
Operating System :: OS Independent
Framework :: Pytest
Framework :: tox
Framework :: Sphinx
Programming Language :: Python
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3 :: Only
keywords =
snekpack
cookiecutter
[options]
install_requires =
# Use progress bars excessively
tqdm
# Command line tools
click
more_click
# Web requirements
pyobo>=0.6.3
flask
bootstrap-flask
flasgger
psutil
sqlalchemy
psycopg2-binary
tabulate
# Random options
zip_safe = false
include_package_data = True
python_requires = >=3.8
# Where is my code
packages = find:
package_dir =
= src
[options.packages.find]
where = src
[options.extras_require]
tests =
pytest
coverage
docs =
sphinx
sphinx-rtd-theme
sphinx-click
sphinx-autodoc-typehints
sphinx_automodapi
# To include LaTeX comments easily in your docs
# texext
[options.entry_points]
console_scripts =
biolookup = biolookup.cli:main
######################
# Doc8 Configuration #
# (doc8.ini) #
######################
[doc8]
max-line-length = 120
##########################
# Coverage Configuration #
# (.coveragerc) #
##########################
[coverage:run]
branch = True
source = biolookup
omit =
tests/*
docs/*
[coverage:paths]
source =
src/biolookup
.tox/*/lib/python*/site-packages/biolookup
[coverage:report]
show_missing = True
exclude_lines =
pragma: no cover
raise NotImplementedError
if __name__ == .__main__.:
def __str__
def __repr__
##########################
# Darglint Configuration #
##########################
[darglint]
docstring_style = sphinx
strictness = short
#########################
# Flake8 Configuration #
# (.flake8) #
#########################
[flake8]
ignore =
S301 # pickle
S403 # pickle
S404
S603
W503 # Line break before binary operator (flake8 is wrong)
B019
exclude =
.tox,
.git,
__pycache__,
docs/source/conf.py,
build,
dist,
tests/fixtures/*,
*.pyc,
*.egg-info,
.cache,
.eggs,
data
max-line-length = 120
max-complexity = 20
import-order-style = pycharm
application-import-names =
biolookup
tests