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Using the AutocorrelatedClock #1101

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sebastianduchene opened this issue Dec 7, 2020 · 0 comments
Open

Using the AutocorrelatedClock #1101

sebastianduchene opened this issue Dec 7, 2020 · 0 comments
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@sebastianduchene
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Hello BEAST1 developers,

I was trying to run the Autocorrelated clock from this example:
https://github.com/beast-dev/beast-mcmc/blob/master/examples/TestXML/testAutocorrelatedRelaxedClock.xml

However, it only runs on 1.8.4, but not on 1.10. I get an error that says:

Object with idref=branchRates has not been parsed.

Is ACLikelihood deprecated? I couldn't set it up through AutoCorrelatedBranchRatesDistribution. Could you please provide an updated XML file or point me in the right direction for setting up the branchRates in the xml. Thanks!

@rambaut rambaut added this to the v.1.10.5 milestone Apr 27, 2023
@rambaut rambaut added the bug label Apr 27, 2023
@rambaut rambaut modified the milestones: v.1.10.5, v1.11 Aug 15, 2023
@rambaut rambaut modified the milestones: v1.11, v10.6 Apr 27, 2024
@rambaut rambaut modified the milestones: v10.6, beast X Jun 16, 2024
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