From 7843b57cdb61775634cec75b864e770b1461ef63 Mon Sep 17 00:00:00 2001 From: gvegayon Date: Sun, 1 Sep 2024 00:52:02 +0000 Subject: [PATCH] Commit from GitHub Actions (Build it) --- README.md | 212 ++++++++++++++++++++++++++---------------------------- 1 file changed, 101 insertions(+), 111 deletions(-) diff --git a/README.md b/README.md index c01c696..a88c0f3 100644 --- a/README.md +++ b/README.md @@ -9,161 +9,151 @@ document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last -update was on 2024-08-25 00:45:04. +update was on 2024-09-01 00:52:00.
-1. **Sensor-Based Fuzzy Inference of COVID-19 Transmission Risk in - Cruise Ships.** +1. **Enforced specificity of an animal symbiosis.** - Triantafyllou G, Sovatzidi G, Dimas G, Kalozoumis PG, Drikakis D, - Kokkinakis IW, Markakis IA, Golna C, Iakovidis D. + Wagner JM, Wong JH, Millar JG, Haxhimali E, Bruckner A, Naragon TH, + Boedicker JQ, Parker J. - Stud Health Technol Inform. 2024 Aug 22;316:1817-1821. doi: - 10.3233/SHTI240784. + bioRxiv \[Preprint\]. 2024 Aug 6:2024.08.04.606548. doi: + 10.1101/2024.08.04.606548. - > In contrast to previous approaches, the proposed method considers - > data captured by several sensors and the ship information system, - > according to a recently proposed smart ship design. Evaluation - > with agent-based simulations confirms the effectiveness of the - > proposed … + > The strict fidelity of many such interspecies associations is + > posited to hinge on sensory tuning to host-derived cues, a model + > supported by studies of neural function in host-specific model + > species. …Remarkably, the rove beetle also performs its symbiotic + > behavior … -2. **Integrating mechanism-based T cell phenotypes into a model of - tumor-immune cell interactions.** +2. **A model-based assessment of social isolation practices for + COVID-19 outbreak response in residential care facilities.** - Tangella N, Cess CG, Ildefonso GV, Finley SD. + Zachreson C, Tobin R, Walker C, Conway E, Shearer FM, McVernon J, + Geard N. - APL Bioeng. 2024 Aug 20;8(3):036111. doi: 10.1063/5.0205996. - eCollection 2024 Sep. + BMC Infect Dis. 2024 Aug 29;24(1):880. doi: + 10.1186/s12879-024-09788-x. - > It is difficult to gain mechanistic insights into the effects of - > cell-cell interactions in tumors using a purely experimental - > approach. However, computational modeling enables quantitative - > investigation of the tumor microenvironment, and agent-based - > modeli … + > Such policies are controversial because of their association with + > adverse mental and physical health indicators and there is a lack + > of modelling that assesses their effectiveness. METHODS: In + > consultation with the Australian Government Department of Health + > and Aged Care, w … -3. **Impact of varying pre-exposure prophylaxis programs on HIV and - Neisseria gonorrhoeae transmission among MSM in the Netherlands: a - modelling study.** +3. **Analyzing the impact of concealed carry weapons and school + resource officers on school shootings: An agent-based modeling + approach.** - Reitsema M, Wallinga J, van Sighem AI, Bezemer D, van der Valk M, - van Aar F, Maria Heijne JC, Hoornenborg E, Rozhnova G, van Benthem - B, Xiridou M. + Harrell NB, Weston RE, Alteri SP, Tzvetanov KT, Dietz JE. - J Acquir Immune Defic Syndr. 2024 Aug 22. doi: - 10.1097/QAI.0000000000003511. Online ahead of print. + J Emerg Manag. 2024 Jul-Aug;22(4):369-388. doi: 10.5055/jem.0818. - > SETTING: We assessed the impact of the PrEP program on - > transmission of HIV and Neisseria gonorrhea (NG) among MSM in the - > Netherlands and examined prospective variations of the program - > after 2024. METHODS: We used an agent-based model to estimate the - > effect of … + > This paper presents a simulation modeling study that examines the + > potential benefit of arming public school staff members with + > concealed carry weapons (CCWs) in combination with school resource + > officers (SROs) during active shooter events. By simulating real + > or hypothetica … -4. **How Model Organisms and Model Uncertainty Impact Our Understanding - of the Risk of Sublethal Impacts of Toxicants to Survival and Growth - of Ecologically Relevant Species.** +4. **Optimizing Indoor Airport Navigation with Advanced Visible Light + Communication Systems.** - Ivan LN, Jones ML, Albers JL, Carvan MJ, Garcia-Reyero N, Nacci D, - Clark B, Klingler R, Murphy CA. + Vieira M, Vieira MA, Galvão G, Louro P, Vieira P, Fantoni A. - Environ Toxicol Chem. 2024 Aug 22. doi: 10.1002/etc.5958. Online - ahead of print. + Sensors (Basel). 2024 Aug 22;24(16):5445. doi: 10.3390/s24165445. - > We tested the hypotheses that the well-known sublethal impacts of - > methylmercury (MeHg) and a polychlorinated biphenyl (PCB126) would - > have meaningful impacts on cohort growth and survival in yellow - > perch (Perca flavescens) and Atlantic killifish (Fundulus - > heteroclitus) populations … + > The methodology includes the use of tetrachromatic LED-equipped + > luminaires with On-Off Keying (OOK) modulation and a mesh cellular + > hybrid structure. Detailed airport modeling and user analysis + > (pedestrians and luggage/passenger carriers) equipped with PINPIN + > optical sensor … -5. **Mating with Multi-Armed Bandits: Reinforcement Learning Models of - Human Mate Search.** +5. **Using exploratory modeling to challenge narratives of risk + governance in Mexico City.** - Conroy-Beam D. + Eakin H, Bojórquez-Tapia LA, Miquelajauregui Y, Grave I, Aguilar BH, + Janssen MA. - Open Mind (Camb). 2024 Aug 15;8:995-1011. doi: - 10.1162/opmi_a\_00156. eCollection 2024. + Proc Natl Acad Sci U S A. 2024 Sep 3;121(36):e2313191121. doi: + 10.1073/pnas.2313191121. Epub 2024 Aug 28. - > Moreover, using agent-based models and a sample of k = 522 - > real-world romantic dyads, I show that a reciprocity-weighted - > Thompson sampling algorithm performs well both in guiding mate - > search in noisy search environments and in reproducing the mate - > choices of … + > We present the results of the project “The Dynamics of + > Multi-Scalar Adaptation in the Megalopolis”, a dynamic, + > exploratory model of socio-hydrological risks in Mexico City that + > was designed to both endogenize and simultaneously challenge the + > dominant narratives that charac … -6. **Current limitations and opportunities for improvements of - agent-based transport models for noise exposure assessment.** +6. **Predicting population-level impacts of projected climate heating + on a temperate freshwater fish.** - Galassi Luquezi L, Le Bescond V, Aumond P, Gastineau P, Can A. + Mintram KS, Brown AR, Maynard SK, Thorbek P, Tyler CR. - J Environ Manage. 2024 Aug 19;368:122129. doi: - 10.1016/j.jenvman.2024.122129. Online ahead of print. + J Fish Biol. 2024 Aug 28. doi: 10.1111/jfb.15889. Online ahead of + print. - > Agent-based models represent a promising approach for simulating - > transport systems and assessing their environmental noise impact, - > potentially enhancing standard noise exposure assessments. - > However, it is very important to understand the relevance of these - > as … + > To realistically predict the effects of projected climate heating + > on wildlife populations, mechanistic tools are required to + > incorporate the inherent physiological effects of temperature + > changes, as well as the associated effects on food availability + > within and across comparable … -7. **A novel framework for crash frequency prediction: Geographic - support vector regression based on agent-based activity models in - Greater Melbourne.** +7. **Landscape of fear: indirect effects of conflict can account for + large-scale population declines in non-state societies.** - Duong Q, Gilbert H, Nguyen H. + Kondor D, Bennett JS, Gronenborn D, Turchin P. - Accid Anal Prev. 2024 Aug 19;207:107747. doi: - 10.1016/j.aap.2024.107747. Online ahead of print. + J R Soc Interface. 2024 Aug;21(217):20240210. doi: + 10.1098/rsif.2024.0210. Epub 2024 Aug 28. - > This research introduces the Geographical Support Vector - > Regression (GSVR) framework, which incorporates generated distance - > matrices, to assess spatial variations and evaluate the influence - > of a wide range of factors, including traffic, infrastructure, - > socio-demographic, travel d … + > This process causes population decline in the abandoned regions + > and increased stress on local resources in better-protected areas + > that are targeted by refugees. By applying analytical and + > computational modelling, we demonstrate that these indirect + > effects of conflict are s … -8. **Wild salmon migration routes influence sea lice infestations: An - agent-based model predicting farm-related infestations on juvenile - salmon.** +8. **Hyper-diverse antigenic variation and resilience to + transmission-reducing intervention in falciparum malaria.** - Jeong J, McEwan G. + Zhan Q, He Q, Tiedje KE, Day KP, Pascual M. - PLoS One. 2024 Aug 20;19(8):e0309215. doi: - 10.1371/journal.pone.0309215. eCollection 2024. + Nat Commun. 2024 Aug 26;15(1):7343. doi: 10.1038/s41467-024-51468-6. - > This study presents an Agent-Based Model (ABM) simulation to - > assess the impact of varying migration routes on sea lice (Caligus - > clemensi) infestation levels in juvenile wild sockeye salmon - > (Oncorhynchus nerka) in the Discovery Islands, British Columbia, - > Canad … + > Incomplete immunity relates to the large antigenic variation of + > the parasite, with the major surface antigen of the blood stage of + > infection encoded by the multigene and recombinant family known as + > var. With a stochastic agent-based model, we investigate the … -9. **Modeling the roles of cohesotaxis, cell-intercalation, and tissue - geometry in collective cell migration of Xenopus mesendoderm.** +9. **Sensor-Based Fuzzy Inference of COVID-19 Transmission Risk in + Cruise Ships.** - Comlekoglu T, Dzamba BJ, Pacheco GG, Shook DR, Sego TJ, Glazier JA, - Peirce SM, DeSimone DW. + Triantafyllou G, Sovatzidi G, Dimas G, Kalozoumis PG, Drikakis D, + Kokkinakis IW, Markakis IA, Golna C, Iakovidis D. - Biol Open. 2024 Aug 15;13(8):bio060615. doi: 10.1242/bio.060615. - Epub 2024 Aug 19. + Stud Health Technol Inform. 2024 Aug 22;316:1817-1821. doi: + 10.3233/SHTI240784. - > Mesendoderm explants removed from embryos provide an - > experimentally tractable system for characterizing collective cell - > movements and behaviors, yet the cellular mechanisms responsible - > for this mode of migration remain elusive. We introduce a novel - > agent-based compu … + > In contrast to previous approaches, the proposed method considers + > data captured by several sensors and the ship information system, + > according to a recently proposed smart ship design. Evaluation + > with agent-based simulations confirms the effectiveness of the + > proposed … -10. **Machine learning for the identification of phase transitions in - interacting agent-based systems: A Desai-Zwanzig example.** +10. **Integrating mechanism-based T cell phenotypes into a model of + tumor-immune cell interactions.** - Evangelou N, Giovanis DG, Kevrekidis GA, Pavliotis GA, Kevrekidis - IG. + Tangella N, Cess CG, Ildefonso GV, Finley SD. - Phys Rev E. 2024 Jul;110(1-1):014121. doi: - 10.1103/PhysRevE.110.014121. + APL Bioeng. 2024 Aug 20;8(3):036111. doi: 10.1063/5.0205996. + eCollection 2024 Sep. - > Deriving closed-form analytical expressions for reduced-order - > models, and judiciously choosing the closures leading to them, has - > long been the strategy of choice for studying phase- and - > noise-induced transitions for agent-based models (ABMs). In this p - > … + > It is difficult to gain mechanistic insights into the effects of + > cell-cell interactions in tumors using a purely experimental + > approach. However, computational modeling enables quantitative + > investigation of the tumor microenvironment, and agent-based + > modeli … ## Code of Conduct