[MacOS] Slicer does not start after installing SlicerJupyter #77

che85 · 2023-11-27T16:55:36Z

After installing SlicerJupyter from the ExtensionManager and restarting Slicer, Slicer crashes at bootup time. (@lassoan, @jcfr). See the problem report below.

When manually removing SlicerJupyter from the Extensions directory, Slicer starts and doesn't crash.

Problem Report

-------------------------------------
Translated Report (Full Report Below)
-------------------------------------

Process:               Slicer [59784]
Path:                  /Applications/Slicer-5.6.0_stable.app/Contents/MacOS/Slicer
Identifier:            org.slicer.slicer
Version:               5.6.0 (5.6.0)
Code Type:             X86-64 (Translated)
Parent Process:        launchd [1]
User ID:               1555809845

Date/Time:             2023-11-27 11:52:30.0779 -0500
OS Version:            macOS 14.1.1 (23B81)
Report Version:        12
Anonymous UUID:        999C5FD2-B9E5-F767-487C-E099C9C72384

Sleep/Wake UUID:       07EE913B-564B-4262-93C7-9F9E2C101C79

Time Awake Since Boot: 410000 seconds
Time Since Wake:       6841 seconds

System Integrity Protection: enabled

Notes:
PC register does not match crashing frame (0x0 vs 0x18B0A404F)

Crashed Thread:        0  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_BAD_INSTRUCTION (SIGILL)
Exception Codes:       0x0000000000000001, 0x0000000000000000

Termination Reason:    Namespace SIGNAL, Code 4 Illegal instruction: 4
Terminating Process:   exc handler [59784]

Error Formulating Crash Report:
PC register does not match crashing frame (0x0 vs 0x18B0A404F)

Thread 0 Crashed::  Dispatch queue: com.apple.main-thread
0   libqSlicerJupyterKernelModule.dylib	       0x18b0a404f qt_plugin_instance + 175
1   QtCore                        	       0x10e426d98 0x10e248000 + 1961368
2   libqSlicerBaseQTCore.dylib    	       0x10b14bfa9 ctkFactoryPluginItem<qSlicerAbstractCoreModule>::instanciator() + 25
3   libqSlicerBaseQTCore.dylib    	       0x10b14b56c qSlicerLoadableModuleFactoryItem::instanciator() + 28
4   libqSlicerBaseQTCore.dylib    	       0x10b14d8d8 ctkAbstractFactory<qSlicerAbstractCoreModule>::instantiate(QString const&) + 200
5   libqSlicerBaseQTCore.dylib    	       0x10b11fc59 qSlicerAbstractModuleFactoryManager::instantiateModule(QString const&) + 57
6   libqSlicerBaseQTCore.dylib    	       0x10b11fa3b qSlicerAbstractModuleFactoryManager::instantiateModules() + 171
7   Slicer                        	       0x100fdc49f int qSlicerApplicationHelper::postInitializeApplication<qSlicerAppMainWindow>(qSlicerApplication&, QScopedPointer<QSplashScreen, QScopedPointerDeleter<QSplashScreen>>&, QScopedPointer<qSlicerAppMainWindow, QScopedPointerDeleter<qSlicerAppMainWindow>>&) + 2063
8   Slicer                        	       0x100fdb9a0 main + 144
9   dyld                          	       0x20103c3a6 start + 1942

Thread 1:: com.apple.rosetta.exceptionserver
0   runtime                       	    0x7ff7ffd67228 0x7ff7ffd63000 + 16936

Thread 2:
0   runtime                       	    0x7ff7ffd8594c 0x7ff7ffd63000 + 141644

Thread 3:
0   runtime                       	    0x7ff7ffd8594c 0x7ff7ffd63000 + 141644

Thread 4:
0   runtime                       	    0x7ff7ffd8594c 0x7ff7ffd63000 + 141644

Thread 5:


...


Model: Mac14,6, BootROM 10151.41.12, proc 12:8:4 processors, 64 GB, SMC 
Graphics: Apple M2 Max, Apple M2 Max, Built-In

The text was updated successfully, but these errors were encountered:

domillima · 2024-02-24T15:34:51Z

Also experiencing this. Have a Apple M3 chip macbook pro. Uninstalled and reinstalled slicer with the same error.

Khoa-NT · 2024-03-20T11:50:57Z

I have the same problem on my M2 Macbook Air

che85 · 2024-04-05T18:00:46Z

@lassoan I compiled locally, packaged and installed via ExtensionManager. When starting Slicer, getting the following:

(base) herzc@K4YF7L70NQ Slicer-build % ./Slicer
2024-04-05 13:58:10.454 Slicer[43613:5435359] WARNING: Secure coding is automatically enabled for restorable state! However, not on all supported macOS versions of this application. Opt-in to secure coding explicitly by implementing NSApplicationDelegate.applicationSupportsSecureRestorableState:.
  Error(s):
    Cannot load library /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32793/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib: (dlopen(/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32793/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib, 0x0085): Library not loaded: @rpath/Frameworks/QtWidgets.framework/Versions/5/QtWidgets
  Referenced from: <959C0021-FD22-35BA-A01D-81572C83F204> /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32793/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib
  Reason: tried: '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Frameworks/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/QtCore.framework/Versions/5/Frameworks/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/MacOS/../Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file))
dlopen(/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32793/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/vtkSlicerJupyterKernelModuleLogicPython.so, 0x0002): Library not loaded: @rpath/Frameworks/QtWidgets.framework/Versions/5/QtWidgets
  Referenced from: <294383B9-4128-3CFB-AF29-EA20B3B7AC4C> /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32793/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/vtkSlicerJupyterKernelModuleLogicPython.so
  Reason: tried: '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/MacOS/../Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file)

che85 · 2024-04-05T18:03:21Z

Compiling with ZeroMQ v4.3.4 failed with:

make[5]: *** [CMakeFiles/objects.dir/src/ws_engine.cpp.o] Error 1
/Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/ctx.cpp:60:10: fatal error: 'gnutls/gnutls.h' file not found
#include <gnutls/gnutls.h>
         ^~~~~~~~~~~~~~~~~
1 error generated.
make[5]: *** [CMakeFiles/objects.dir/src/ctx.cpp.o] Error 1
In file included from /Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/curve_client.cpp:36:
/Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/session_base.hpp:116:10: warning: 'process_conn_failed' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
    void process_conn_failed ();
         ^
/Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/object.hpp:149:18: note: overridden virtual function is here
    virtual void process_conn_failed ();
                 ^
In file included from /Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/curve_mechanism_base.cpp:35:
/Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/session_base.hpp:116:10: warning: 'process_conn_failed' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
    void process_conn_failed ();
         ^
/Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/object.hpp:149:18: note: overridden virtual function is here
    virtual void process_conn_failed ();

I updated to v.4.3.5 and it compiled.

che85 · 2024-04-05T20:29:05Z

When running SlicerWithSlicerJupyter directly from the inner-build directory, everything seems to be working and SlicerJupyter can be used.

lassoan · 2024-04-06T15:06:13Z

@che85 Thanks for the information, I've updated the build scripts to use ZeroMQ 4.3.5 - 724809a

When running SlicerWithSlicerJupyter directly from the inner-build directory, everything seems to be working and SlicerJupyter can be used.

Thanks for the information, this is good to know.

After installing SlicerJupyter from the ExtensionManager and restarting Slicer, Slicer crashes at bootup time

Does this still occur with the latest Slicer Preview Release?

che85 · 2024-04-08T14:12:26Z

@lassoan I just checked with the most recent preview and it is still crashing.

che85 · 2024-08-09T15:21:19Z

@jcfr I compiled Slicer on macOS Sonoma 14.4.1 with Apple M2 Max

cmake ../../sources/cpp/Slicer/ \
-DCMAKE_OSX_DEPLOYMENT_TARGET:STRING=11 \
-DCMAKE_BUILD_TYPE:STRING=Debug \
-DQt5_DIR:PATH=/Users/herzc/Qt/5.15.2/clang_64/lib/cmake/Qt5 \
-DCMAKE_OSX_ARCHITECTURES:STRING=x86_64 \
-Wno-unused-but-set-variable

Compilation failed with the current LibArchive version, so I updated it to use v3.7.4 and everything compiled successfully.

After compiling and packaging SlicerJupyter, and installing it through the ExtensionManager, Slicer starts fine, but SlicerJupyter is not loaded. Upon checking I noticed the following error message:

2024-08-08 19:34:28.753 Slicer[26063:4234140] WARNING: Secure coding is automatically enabled for restorable state! However, not on all supported macOS versions of this application. Opt-in to secure coding explicitly by implementing NSApplicationDelegate.applicationSupportsSecureRestorableState:.
  Error(s):
    Cannot load library /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32964/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib: (dlopen(/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32964/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib, 0x0085): Library not loaded: @rpath/Frameworks/QtWidgets.framework/Versions/5/QtWidgets
  Referenced from: <EB4BE96E-3562-3BD1-B357-1DE7451295BC> /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32964/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib
  Reason: tried: '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Frameworks/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/QtCore.framework/Versions/5/Frameworks/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/MacOS/../Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file))
dlopen(/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32964/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/vtkSlicerJupyterKernelModuleLogicPython.so, 0x0002): Library not loaded: @rpath/Frameworks/QtWidgets.framework/Versions/5/QtWidgets
  Referenced from: <04A0F438-50C0-39C0-B006-CB2AB9DD1E3B> /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32964/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/vtkSlicerJupyterKernelModuleLogicPython.so
  Reason: tried: '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/MacOS/../Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file)
Switch to module:  "Welcome"
Loading Slicer RC file [/Users/herzc/.slicerrc.py]

@jcfr Would you happen to know what could be the issue?

Thank you.

justinsunger · 2024-08-13T21:08:03Z

@jcfr I compiled Slicer on macOS Sonoma 14.4.1 with Apple M2 Max

cmake ../../sources/cpp/Slicer/ \
-DCMAKE_OSX_DEPLOYMENT_TARGET:STRING=11 \
-DCMAKE_BUILD_TYPE:STRING=Debug \
-DQt5_DIR:PATH=/Users/herzc/Qt/5.15.2/clang_64/lib/cmake/Qt5 \
-DCMAKE_OSX_ARCHITECTURES:STRING=x86_64 \
-Wno-unused-but-set-variable

Compilation failed with the current LibArchive version, so I updated it to use v3.7.4 and everything compiled successfully.

After compiling and packaging SlicerJupyter, and installing it through the ExtensionManager, Slicer starts fine, but SlicerJupyter is not loaded. Upon checking I noticed the following error message:

2024-08-08 19:34:28.753 Slicer[26063:4234140] WARNING: Secure coding is automatically enabled for restorable state! However, not on all supported macOS versions of this application. Opt-in to secure coding explicitly by implementing NSApplicationDelegate.applicationSupportsSecureRestorableState:.
  Error(s):
    Cannot load library /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32964/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib: (dlopen(/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32964/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib, 0x0085): Library not loaded: @rpath/Frameworks/QtWidgets.framework/Versions/5/QtWidgets
  Referenced from: <EB4BE96E-3562-3BD1-B357-1DE7451295BC> /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32964/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib
  Reason: tried: '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Frameworks/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/QtCore.framework/Versions/5/Frameworks/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/MacOS/../Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file))
dlopen(/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32964/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/vtkSlicerJupyterKernelModuleLogicPython.so, 0x0002): Library not loaded: @rpath/Frameworks/QtWidgets.framework/Versions/5/QtWidgets
  Referenced from: <04A0F438-50C0-39C0-B006-CB2AB9DD1E3B> /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32964/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/vtkSlicerJupyterKernelModuleLogicPython.so
  Reason: tried: '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/MacOS/../Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file)
Switch to module:  "Welcome"
Loading Slicer RC file [/Users/herzc/.slicerrc.py]

@jcfr Would you happen to know what could be the issue?

Thank you.

I am also experiencing this issue with MacOS for the current Slicer release so I reverted to Slicer 5.2.2 for now where SlicerJupyter extension loads without issue.

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[MacOS] Slicer does not start after installing SlicerJupyter #77

[MacOS] Slicer does not start after installing SlicerJupyter #77

che85 commented Nov 27, 2023 •

edited

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[MacOS] Slicer does not start after installing SlicerJupyter #77

[MacOS] Slicer does not start after installing SlicerJupyter #77

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che85 commented Nov 27, 2023 • edited Loading

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che85 commented Nov 27, 2023 •

edited

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