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@kaeldai This is probably not your area, but just wondering if you know of someone we could ask... Basically, why would an interneuron cell model with no apical dendrite have values in its tuned parameter file specifically for the apical dendrite group?
Hi @pgleeson - I don't know much about the all-active models or how they were optimized. I think the best person to ask would be Nathan Gouwens who did a lot of the main cell-types db optimization. I don't know if he's on github but you can try him at nathang at alleninstitute dot org.
The chosen all active cell has fitted parameters which use group apic:
AllenInstituteNeuroML/CellTypesDatabase/models/497233223/464198958_fit.json
Line 249 in af1a0ba
These are usually defined by type (2nd column in SWC file) = 4, e.g.
AllenInstituteNeuroML/CellTypesDatabase/models/483108201/Rbp4-Cre_KL100_Ai14-196623.04.01.01_491119548_m.swc
Line 1185 in af1a0ba
but this is not present in the swc file for this cell:
https://github.com/OpenSourceBrain/AllenInstituteNeuroML/blob/pg_test/CellTypesDatabase/models/497233223/Sst-IRES-Cre_Ai14-165865.03.01.01_491119181_m.swc
The 3d view also suggests no apic:
http://celltypes.brain-map.org/experiment/morphology/464198958
So why is it used in the fit file??
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