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Results column names don't match with data when including interaction term #44

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lis131 opened this issue Jun 11, 2024 · 1 comment

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@lis131
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lis131 commented Jun 11, 2024

Hello,
Thanks for developing this great tool.

I was trying to follow the instructions using the example datasets. When I try to run with the interaction term using the formula: testformula=@formula(y ~ snp + snp & sex), the got the following results. I'm not sure which columns those last 3 numbers match to. I compared with the results without interaction term, seems they represent those pvalues? thanks

chr pos snpid varid allele1 allele2 hwepval maf infoscore betapval taupval jointpval
Int64 Int64 String15 String15 String1 String1 Float64 Float64 Float64 Missing Missing Missing
1 1001 RSID_101 SNPID_101 A G 0.792312 0.518204 0.626591 missing missing missing
1 2000 RSID_2 SNPID_2 A G 1.7332e-7 3.54836e-20 7.09672e-20 missing missing missing
1 2001 RSID_102 SNPID_102 A G 1.71603e-7 4.43481e-20 8.86961e-20 missing missing missing
1 3000 RSID_3 SNPID_3 A G 0.184132 0.486155 0.2671 missing missing missing
1 3001 RSID_103 SNPID_103 A G 0.184132 0.486155 0.2671 missing missing missing
@lis131 lis131 changed the title Results column names don't match with data Results column names don't match with data when including interaction term Jun 11, 2024
@kose-y
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kose-y commented Sep 3, 2024

You are correct, the last three numbers are betapval, taupval, and jointpval; hwepval, maf, infoscore are not printed in this case. Thank you for pointing this out.

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