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I was trying to follow the instructions using the example datasets. When I try to run with the interaction term using the formula: testformula=@formula(y ~ snp + snp & sex), the got the following results. I'm not sure which columns those last 3 numbers match to. I compared with the results without interaction term, seems they represent those pvalues? thanks
chr
pos
snpid
varid
allele1
allele2
hwepval
maf
infoscore
betapval
taupval
jointpval
Int64
Int64
String15
String15
String1
String1
Float64
Float64
Float64
Missing
Missing
Missing
1
1001
RSID_101
SNPID_101
A
G
0.792312
0.518204
0.626591
missing
missing
missing
1
2000
RSID_2
SNPID_2
A
G
1.7332e-7
3.54836e-20
7.09672e-20
missing
missing
missing
1
2001
RSID_102
SNPID_102
A
G
1.71603e-7
4.43481e-20
8.86961e-20
missing
missing
missing
1
3000
RSID_3
SNPID_3
A
G
0.184132
0.486155
0.2671
missing
missing
missing
1
3001
RSID_103
SNPID_103
A
G
0.184132
0.486155
0.2671
missing
missing
missing
The text was updated successfully, but these errors were encountered:
lis131
changed the title
Results column names don't match with data
Results column names don't match with data when including interaction term
Jun 11, 2024
You are correct, the last three numbers are betapval, taupval, and jointpval; hwepval, maf, infoscore are not printed in this case. Thank you for pointing this out.
Hello,
Thanks for developing this great tool.
I was trying to follow the instructions using the example datasets. When I try to run with the interaction term using the formula: testformula=@formula(y ~ snp + snp & sex), the got the following results. I'm not sure which columns those last 3 numbers match to. I compared with the results without interaction term, seems they represent those pvalues? thanks
The text was updated successfully, but these errors were encountered: